Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10015561	0.82[CHB][hapmap]
rs10021932	0.81[CHB][hapmap]
rs10030659	0.86[CHB][hapmap]
rs11727585	0.86[CHB][hapmap]
rs11728647	0.82[CHB][hapmap]
rs11936304	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13105212	0.88[LWK][hapmap]
rs13125961	0.82[CHB][hapmap]
rs13131816	0.82[CHB][hapmap]
rs1372486	0.86[CHB][hapmap]
rs1442097	0.86[CHB][hapmap]
rs1442099	0.83[LWK][hapmap]
rs1442101	0.84[LWK][hapmap]
rs1442107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1561777	0.80[AFR][1000 genomes]
rs2119779	0.86[CHB][hapmap]
rs2165611	0.86[CHB][hapmap]
rs3906823	0.84[LWK][hapmap]
rs6447534	0.84[LWK][hapmap]
rs6819531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7680321	0.84[LWK][hapmap]
rs7680746	0.84[LWK][hapmap]
rs971353	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs971354	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47112200-47114400	Weak transcription	Fetal Brain Male	brain
2	chr4:47113200-47114400	Enhancers	Fetal Lung	lung

Quick Search: