Variant report

Variant	rs13105212
Chromosome Location	chr4:47120789-47120790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10001018	0.90[CHB][hapmap]
rs10016388	0.90[CHB][hapmap]
rs10025913	0.82[ASW][hapmap];0.91[YRI][hapmap]
rs10034675	0.82[YRI][hapmap]
rs10938473	0.90[CHB][hapmap]
rs10938474	0.89[JPT][hapmap]
rs10938477	0.82[ASW][hapmap];0.91[YRI][hapmap]
rs12502432	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs13117729	0.91[YRI][hapmap]
rs1372493	0.82[YRI][hapmap]
rs1442093	0.91[YRI][hapmap]
rs1442094	0.82[ASW][hapmap];0.91[YRI][hapmap]
rs1442095	0.91[YRI][hapmap]
rs1442099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1442101	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1442106	0.91[YRI][hapmap]
rs1542097	0.90[CHB][hapmap]
rs1561776	0.82[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap]
rs1561777	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2028524	0.88[LWK][hapmap]
rs3906823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4315750	0.85[JPT][hapmap]
rs4317179	0.85[JPT][hapmap]
rs4396968	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs4501194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4695195	0.82[YRI][hapmap]
rs6447533	0.96[AFR][1000 genomes]
rs6447534	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs6447535	0.90[CHB][hapmap]
rs6447537	0.91[YRI][hapmap]
rs6819839	0.90[CHB][hapmap]
rs6827925	0.90[CHB][hapmap]
rs6829206	0.87[JPT][hapmap]
rs6839184	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs6842392	0.91[YRI][hapmap]
rs6846701	0.85[JPT][hapmap]
rs7666212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7672580	0.91[YRI][hapmap]
rs7680321	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7680746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9291304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs971353	0.88[LWK][hapmap]
rs971354	0.88[LWK][hapmap]
rs993776	0.82[JPT][hapmap]
rs994447	0.90[CHB][hapmap]
rs9991346	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13105212	OCIAD2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47120200-47120800	Enhancers	Fetal Heart	heart
2	chr4:47120600-47120800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:47120600-47121000	Enhancers	Fetal Brain Male	brain
4	chr4:47120600-47121000	Enhancers	Fetal Lung	lung

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