Variant report

Variant	rs12502432
Chromosome Location	chr4:47189216-47189217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10001018	0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10001568	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10002370	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10016388	0.93[JPT][hapmap]
rs10017581	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10025913	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs10028379	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10034675	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10805151	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10805152	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10938473	0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10938474	0.89[JPT][hapmap]
rs10938477	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728647	0.91[GIH][hapmap]
rs12500569	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12505780	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13105212	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs13117729	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13135929	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1372487	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1372493	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372495	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1372496	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442093	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442094	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs1442098	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1442099	0.82[ASW][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs1442101	0.82[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap]
rs1442104	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1442106	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542097	0.82[ASW][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1561776	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1596139	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2044084	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2882622	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3906823	0.82[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap]
rs4501194	0.82[YRI][hapmap]
rs4508858	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4694836	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4694837	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4695193	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4695195	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4695196	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6447534	0.82[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap]
rs6447535	0.82[ASW][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6447536	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6447537	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs6819839	0.82[ASW][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap]
rs6827925	0.82[ASW][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.83[LWK][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6832403	0.82[CEU][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839184	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap]
rs6839998	0.81[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6842392	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs6847023	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6853661	0.84[ASN][1000 genomes]
rs6854338	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7660765	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7666212	0.82[YRI][hapmap]
rs7672580	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672757	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7680321	0.82[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap]
rs7680746	0.82[ASW][hapmap];0.82[LWK][hapmap];0.82[YRI][hapmap]
rs7684997	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7689895	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9762551	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs988944	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs993776	0.82[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs994447	0.82[ASW][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.83[LWK][hapmap];0.82[MEX][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9991346	0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1013512	chr4:47178547-47213133	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv537079	chr4:47178547-47213133	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47186000-47190200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr4:47187000-47192200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:47187400-47192400	Weak transcription	Fetal Intestine Large	intestine
4	chr4:47188600-47189800	Active TSS	Rectal Mucosa Donor 31	rectum
5	chr4:47189000-47189600	Active TSS	Colonic Mucosa	Colon
6	chr4:47189000-47190000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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