Variant report

Variant	rs6854338
Chromosome Location	chr4:47156486-47156487
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10001018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002370	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10017581	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10034675	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10805151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805152	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10938473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938477	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12500569	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12502432	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12505780	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117729	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13135929	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1372487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372493	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1372495	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1372496	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1442093	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1442094	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1442098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442104	0.85[AMR][1000 genomes]
rs1442106	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1542097	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561776	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2882622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508858	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4694836	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4694837	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4695193	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695195	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6447535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832403	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6839998	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6847023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853661	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660765	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7672580	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7672757	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7684997	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7689895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9762551	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs988944	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994447	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv4325	chr4:47142343-47187026	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47155000-47156600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links