Variant report

Variant	rs4396968
Chromosome Location	chr4:47089184-47089185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10003525	1.00[CEU][hapmap]
rs11936304	0.94[YRI][hapmap]
rs13105212	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs1442099	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs1442101	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs3906823	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs4315750	0.83[JPT][hapmap]
rs4317179	0.83[JPT][hapmap]
rs4501194	0.85[JPT][hapmap]
rs4613538	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs4694834	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs6447530	1.00[CEU][hapmap];0.80[TSI][hapmap]
rs6447534	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs6829206	0.87[JPT][hapmap]
rs6846701	0.83[JPT][hapmap]
rs7666212	0.85[JPT][hapmap]
rs7680321	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs7680746	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs9291304	0.83[JPT][hapmap]
rs993776	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:47079200-47090400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:47088000-47090200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:47088000-47090400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:47088800-47089200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:47088800-47089200	Enhancers	NHEK	skin
7	chr4:47089000-47090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links