Variant report

Variant	rs11936304
Chromosome Location	chr4:47089298-47089299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10030659	0.83[CHB][hapmap]
rs11727585	0.83[CHB][hapmap]
rs11728647	0.83[CHB][hapmap]
rs13125961	0.83[CHB][hapmap]
rs13131816	0.83[CHB][hapmap]
rs1372486	0.83[CHB][hapmap]
rs1442097	0.83[CHB][hapmap]
rs1442107	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2028524	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs2119779	0.82[CHB][hapmap]
rs2165611	0.83[CHB][hapmap]
rs4396968	0.94[YRI][hapmap]
rs6819531	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs971353	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs971354	0.88[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:47079200-47090400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:47088000-47090200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:47088000-47090400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:47089000-47090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links