Variant report

Variant	rs993777
Chromosome Location	chr4:47202340-47202341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004181	0.80[YRI][hapmap]
rs10015561	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs10021932	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10030659	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.97[YRI][hapmap]
rs1023775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1023776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11727585	0.91[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11728647	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12501039	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13125961	0.87[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13131816	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1372486	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.97[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1442097	0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1442105	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1963910	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2119779	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165611	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap]
rs4695197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6447539	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6819531	0.81[CHB][hapmap]
rs7660544	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1013512	chr4:47178547-47213133	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv537079	chr4:47178547-47213133	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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