Variant report
| Variant | rs13141573 |
|---|---|
| Chromosome Location | chr4:79036196-79036197 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10023665 | 0.80[AMR][1000 genomes] |
| rs10029115 | 0.84[AMR][1000 genomes] |
| rs10029734 | 0.84[AMR][1000 genomes] |
| rs13106100 | 0.82[AMR][1000 genomes] |
| rs13106755 | 0.81[AMR][1000 genomes] |
| rs13130161 | 0.82[AMR][1000 genomes] |
| rs17002930 | 0.81[AMR][1000 genomes] |
| rs28583476 | 0.84[AMR][1000 genomes] |
| rs28750761 | 0.84[AMR][1000 genomes] |
| rs28796316 | 0.83[AMR][1000 genomes] |
| rs28854287 | 0.84[AMR][1000 genomes] |
| rs2903453 | 0.86[AMR][1000 genomes] |
| rs4345212 | 0.95[AMR][1000 genomes] |
| rs4410553 | 0.81[AMR][1000 genomes] |
| rs4423900 | 0.82[AMR][1000 genomes] |
| rs4561952 | 0.84[AMR][1000 genomes] |
| rs4583783 | 0.82[AMR][1000 genomes] |
| rs56006343 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs56299187 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6822247 | 0.82[AMR][1000 genomes] |
| rs6842152 | 0.82[AMR][1000 genomes] |
| rs6847174 | 0.82[AMR][1000 genomes] |
| rs6857527 | 0.81[AMR][1000 genomes] |
| rs71609399 | 0.84[AMR][1000 genomes] |
| rs72654653 | 0.93[AMR][1000 genomes] |
| rs7437861 | 0.81[AMR][1000 genomes] |
| rs7441634 | 0.90[AMR][1000 genomes] |
| rs7672583 | 0.82[AMR][1000 genomes] |
| rs7689960 | 0.82[AMR][1000 genomes] |
| rs9993527 | 0.84[AMR][1000 genomes] |
| rs9995229 | 0.84[AMR][1000 genomes] |
| rs9998932 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534024 | chr4:78785189-79437403 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009633 | chr4:78887573-79652236 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv520625 | chr4:79002655-79071788 | Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv525530 | chr4:79024524-79266563 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv3371584 | chr4:79032228-79036426 | Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:79022200-79039200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr4:79027000-79039400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
