Variant report

Variant	rs7437861
Chromosome Location	chr4:79013412-79013413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10008931	0.82[EUR][1000 genomes]
rs10018454	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10023589	0.84[AMR][1000 genomes]
rs10023665	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10023697	0.86[EUR][1000 genomes]
rs10025769	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10029115	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10029734	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10030639	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10033428	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10213063	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213609	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10856998	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11098038	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13106100	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13106755	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13127746	0.89[ASN][1000 genomes]
rs13130161	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13141573	0.81[AMR][1000 genomes]
rs13144972	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13150598	0.85[EUR][1000 genomes]
rs17002930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878439	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28479828	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28583476	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28635454	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2867006	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2867008	0.86[EUR][1000 genomes]
rs28677913	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707182	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28750761	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28796316	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28822779	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28854287	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2903453	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4156	0.86[EUR][1000 genomes]
rs4345212	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4367202	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4388115	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423899	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423900	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4443313	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4561952	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4583783	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4610363	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4634250	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55794249	0.84[ASN][1000 genomes]
rs56006343	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56299187	0.81[AMR][1000 genomes]
rs58969863	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6820400	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822247	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842152	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6847174	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6856815	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6857278	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6857527	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71609399	0.87[EUR][1000 genomes]
rs72654653	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7441634	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7666444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7672583	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7684543	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689960	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695768	0.80[AMR][1000 genomes]
rs7698326	0.86[EUR][1000 genomes]
rs9307335	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307336	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9307337	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9307338	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9307339	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307340	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9307352	0.86[EUR][1000 genomes]
rs9991356	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9993527	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9994298	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9994422	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9995229	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9998932	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9999763	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78981200-79016600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:78995800-79015800	Weak transcription	HepG2	liver
3	chr4:79001600-79014200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:79002200-79013600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:79002800-79013600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:79003000-79013600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:79003000-79016800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:79007000-79015800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:79011000-79013800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:79011000-79014200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:79011200-79013600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:79011200-79013800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:79011400-79013600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:79011400-79016600	Weak transcription	Fetal Intestine Small	intestine
15	chr4:79013200-79014000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:79013200-79014000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:79013200-79014000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:79013200-79014200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:79013200-79014600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:79013200-79015000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:79013400-79014000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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