Variant report

Variant	rs13150598
Chromosome Location	chr4:79078880-79078881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10000651	0.94[ASN][1000 genomes]
rs10002604	0.82[ASN][1000 genomes]
rs10003965	0.85[ASN][1000 genomes]
rs10004159	0.85[ASN][1000 genomes]
rs10005735	0.85[ASN][1000 genomes]
rs10007371	0.91[ASN][1000 genomes]
rs10008931	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10018454	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10023697	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025194	0.85[ASN][1000 genomes]
rs10025611	0.85[ASN][1000 genomes]
rs10025769	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10025977	0.85[ASN][1000 genomes]
rs10026268	0.85[ASN][1000 genomes]
rs10028988	0.85[ASN][1000 genomes]
rs10029115	0.92[EUR][1000 genomes]
rs10029734	0.93[EUR][1000 genomes]
rs10030639	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10033428	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10213063	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10213609	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518194	0.94[ASN][1000 genomes]
rs10856998	0.82[EUR][1000 genomes]
rs11098038	0.83[EUR][1000 genomes]
rs13106100	0.85[EUR][1000 genomes]
rs13106755	0.85[EUR][1000 genomes]
rs13130161	0.85[EUR][1000 genomes]
rs13133346	0.85[ASN][1000 genomes]
rs13136410	0.85[ASN][1000 genomes]
rs13144972	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1317018	0.85[ASN][1000 genomes]
rs16997130	0.85[ASN][1000 genomes]
rs17002930	0.85[EUR][1000 genomes]
rs17420118	0.88[ASN][1000 genomes]
rs17420328	0.88[ASN][1000 genomes]
rs1878437	0.85[ASN][1000 genomes]
rs1878438	0.84[EUR][1000 genomes]
rs1878439	0.84[EUR][1000 genomes]
rs2078481	0.85[ASN][1000 genomes]
rs28409486	0.88[ASN][1000 genomes]
rs28479828	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28542863	0.85[ASN][1000 genomes]
rs28583476	0.92[EUR][1000 genomes]
rs28597965	0.85[ASN][1000 genomes]
rs28635454	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2867004	0.91[ASN][1000 genomes]
rs2867006	0.91[EUR][1000 genomes]
rs2867008	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28671092	0.85[ASN][1000 genomes]
rs28677913	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28707182	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28750077	0.91[ASN][1000 genomes]
rs28750761	0.90[EUR][1000 genomes]
rs28796316	0.92[EUR][1000 genomes]
rs28822779	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28854287	0.89[EUR][1000 genomes]
rs2903452	0.85[ASN][1000 genomes]
rs2903453	0.90[EUR][1000 genomes]
rs34552897	0.85[ASN][1000 genomes]
rs35374567	0.85[ASN][1000 genomes]
rs35967777	0.88[ASN][1000 genomes]
rs4156	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4345212	0.86[EUR][1000 genomes]
rs4388115	0.85[EUR][1000 genomes]
rs4410553	0.85[EUR][1000 genomes]
rs4423900	0.84[EUR][1000 genomes]
rs4443313	0.81[EUR][1000 genomes]
rs4561952	0.91[EUR][1000 genomes]
rs4583783	0.85[EUR][1000 genomes]
rs4610363	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4634250	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55690666	0.85[ASN][1000 genomes]
rs56368720	0.85[ASN][1000 genomes]
rs58969863	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58970756	0.91[ASN][1000 genomes]
rs66631138	0.85[ASN][1000 genomes]
rs6820400	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6822247	0.85[EUR][1000 genomes]
rs6838483	0.85[ASN][1000 genomes]
rs6838661	0.94[ASN][1000 genomes]
rs6840357	0.85[ASN][1000 genomes]
rs6842152	0.85[EUR][1000 genomes]
rs6847174	0.85[EUR][1000 genomes]
rs6848061	0.88[ASN][1000 genomes]
rs6856815	0.83[EUR][1000 genomes]
rs6857278	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6857527	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6858810	0.85[ASN][1000 genomes]
rs71609399	0.83[ASN][1000 genomes]
rs72654653	0.86[EUR][1000 genomes]
rs72654668	0.85[ASN][1000 genomes]
rs7437861	0.85[EUR][1000 genomes]
rs7441634	0.90[EUR][1000 genomes]
rs7666444	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7670625	0.85[ASN][1000 genomes]
rs7672583	0.84[EUR][1000 genomes]
rs7673873	0.85[ASN][1000 genomes]
rs7675794	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7677432	0.85[ASN][1000 genomes]
rs7681238	0.85[ASN][1000 genomes]
rs7684543	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689960	0.84[EUR][1000 genomes]
rs7695979	0.85[ASN][1000 genomes]
rs7698326	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699120	0.85[ASN][1000 genomes]
rs9307335	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307336	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307337	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307338	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307339	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307340	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307352	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991356	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9993527	0.92[EUR][1000 genomes]
rs9994298	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9994422	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9995229	0.92[EUR][1000 genomes]
rs9998932	0.92[EUR][1000 genomes]
rs9999763	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79071000-79083600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:79071200-79082600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:79071400-79096600	Weak transcription	Pancreas	Pancrea
4	chr4:79073600-79082000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:79077800-79079000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:79078000-79082400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:79078000-79083800	Weak transcription	Fetal Intestine Large	intestine
8	chr4:79078200-79082400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:79078200-79083600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:79078200-79085000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:79078200-79094200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:79078400-79081600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:79078400-79081800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:79078400-79083000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:79078400-79083400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:79078400-79083600	Weak transcription	HepG2	liver
17	chr4:79078400-79095600	Weak transcription	Psoas Muscle	Psoas

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