Variant report

Variant	rs7675794
Chromosome Location	chr4:79091456-79091457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79091323..79093499-chr4:79096107..79097895,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10008931	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10023697	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10029734	0.81[EUR][1000 genomes]
rs13150598	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2867008	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4156	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7698326	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9307352	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9998932	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv829977	chr4:79082318-79110300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79071400-79096600	Weak transcription	Pancreas	Pancrea
2	chr4:79078200-79094200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:79078400-79095600	Weak transcription	Psoas Muscle	Psoas
4	chr4:79083800-79093000	Weak transcription	Fetal Heart	heart
5	chr4:79084200-79091800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:79084200-79093000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:79085000-79093000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:79087200-79092800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:79089200-79095600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:79089600-79092000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:79090000-79095600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:79090200-79093000	Weak transcription	HepG2	liver
13	chr4:79090200-79093200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:79090200-79094400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:79090200-79104200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:79091200-79091800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:79091400-79092000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:79091400-79092200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:79091400-79092400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:79091400-79093600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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