Variant report

Variant	rs13145731
Chromosome Location	chr4:171620531-171620532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11132858	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11132859	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11931393	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644221	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114948	0.86[ASN][1000 genomes]
rs1403211	0.86[ASN][1000 genomes]
rs1568620	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1568621	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17662713	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1915996	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1996831	0.86[ASN][1000 genomes]
rs28702559	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35465717	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6828756	0.82[EUR][1000 genomes]
rs7654851	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7680601	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9991006	0.86[ASN][1000 genomes]
rs9992998	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv596167	chr4:171576294-171672038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881141	chr4:171620514-171680223	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171619800-171620600	Weak transcription	Aorta	Aorta
2	chr4:171620400-171621800	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links