Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:172898051..172899837-chr4:172902781..172904599,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11722467	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12503009	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12503041	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12510139	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12510280	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17057754	0.82[CEU][hapmap]
rs17057824	0.83[AMR][1000 genomes]
rs179639	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs230	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs332962	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs332965	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs332966	0.85[EUR][1000 genomes]
rs332967	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs332968	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs332979	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34039621	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34305682	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs373772	0.82[CEU][hapmap]
rs409190	0.82[CEU][hapmap]
rs4692907	0.83[CEU][hapmap]
rs62326334	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62326336	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9993396	0.81[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1025388	chr4:172891427-172951140	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172900800-172905000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:172902600-172905000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:172902600-172905000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:172902600-172905400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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