Variant report

Variant	rs9993396
Chromosome Location	chr4:172897431-172897432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10032268	0.81[CEU][hapmap]
rs11722467	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12503009	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12503041	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12510139	0.86[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12510280	0.87[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13118856	0.86[EUR][1000 genomes]
rs13145737	0.81[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13152268	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1485872	0.96[CEU][hapmap]
rs17057754	1.00[CEU][hapmap]
rs17057759	0.91[CEU][hapmap]
rs17057824	0.86[AMR][1000 genomes]
rs179639	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs189144	0.90[CEU][hapmap]
rs230	0.87[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs231586	0.83[CEU][hapmap]
rs2332433	0.87[EUR][1000 genomes]
rs2332434	0.91[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2877676	0.86[EUR][1000 genomes]
rs3113678	0.91[CEU][hapmap]
rs332962	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs332965	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs332966	0.98[EUR][1000 genomes]
rs332967	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs332968	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs332969	0.91[CEU][hapmap]
rs332971	0.87[CEU][hapmap]
rs332979	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs333003	0.91[CEU][hapmap]
rs333004	0.87[CEU][hapmap]
rs34039621	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34305682	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs373772	0.91[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs392614	0.96[CEU][hapmap]
rs405831	0.96[CEU][hapmap]
rs405986	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs408196	0.88[EUR][1000 genomes]
rs409190	0.95[CEU][hapmap]
rs414428	0.88[EUR][1000 genomes]
rs420648	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs4505786	0.96[CEU][hapmap]
rs453429	0.92[CEU][hapmap]
rs4692907	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs547753	0.85[EUR][1000 genomes]
rs578496	0.87[EUR][1000 genomes]
rs62326334	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62326336	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6832654	0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs693756	0.91[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs7434835	0.96[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv520744	chr4:172797761-172897603	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1025388	chr4:172891427-172951140	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172896400-172900600	Weak transcription	Brain Germinal Matrix	brain

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