Variant report

Variant	rs405986
Chromosome Location	chr4:172878374-172878375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10005702	0.80[EUR][1000 genomes]
rs10032268	0.80[CEU][hapmap]
rs11722467	0.91[EUR][1000 genomes]
rs12503009	0.90[EUR][1000 genomes]
rs12503041	0.90[EUR][1000 genomes]
rs12508478	0.80[EUR][1000 genomes]
rs12510139	0.81[EUR][1000 genomes]
rs12510280	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs13118856	0.95[EUR][1000 genomes]
rs13152268	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1485872	0.96[CEU][hapmap]
rs17057754	0.96[CEU][hapmap];0.87[JPT][hapmap]
rs17057759	0.93[CEU][hapmap];0.87[JPT][hapmap]
rs179639	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs189144	0.91[CEU][hapmap]
rs2002564	0.80[EUR][1000 genomes]
rs230	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs231586	0.82[CEU][hapmap]
rs2332433	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2332434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2877676	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3113678	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs332962	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs332965	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs332966	0.89[EUR][1000 genomes]
rs332967	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs332968	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs332969	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs332971	0.96[CEU][hapmap]
rs332979	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs332981	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs333003	0.92[CEU][hapmap]
rs333004	0.86[CEU][hapmap]
rs333008	0.88[EUR][1000 genomes]
rs373772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs392614	0.96[CEU][hapmap]
rs405831	0.96[CEU][hapmap]
rs408196	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs409190	0.96[CEU][hapmap]
rs414428	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs420648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4505786	0.92[CEU][hapmap]
rs453429	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4692907	0.93[CEU][hapmap]
rs547753	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs578496	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62326334	0.91[EUR][1000 genomes]
rs62326336	0.91[EUR][1000 genomes]
rs6832654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840431	0.80[EUR][1000 genomes]
rs693756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7434835	0.92[CEU][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes]
rs875802	0.81[EUR][1000 genomes]
rs9993396	0.92[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv520744	chr4:172797761-172897603	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029351	chr4:172809594-172893072	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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