Variant report

Variant	rs13146601
Chromosome Location	chr4:19741718-19741719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12506336	0.86[ASN][1000 genomes]
rs12509034	0.84[ASN][1000 genomes]
rs13124951	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13137813	0.84[ASN][1000 genomes]
rs35289167	0.87[ASN][1000 genomes]
rs57793755	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58143508	0.83[ASN][1000 genomes]
rs60826690	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73092829	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19737400-19749600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:19740000-19742000	Enhancers	Dnd41	blood
3	chr4:19740600-19741800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:19740600-19742000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:19740600-19742000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:19740800-19753600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:19741200-19741800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:19741200-19741800	Flanking Active TSS	Hela-S3	cervix
9	chr4:19741400-19741800	Enhancers	NH-A	brain
10	chr4:19741400-19743600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:19741600-19741800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:19741600-19741800	Enhancers	NHLF	lung
13	chr4:19741600-19741800	Enhancers	Osteobl	bone
14	chr4:19741600-19742000	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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