Variant report

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10028641	0.86[ASN][1000 genomes]
rs12506336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13124951	0.96[ASN][1000 genomes]
rs13146601	0.87[ASN][1000 genomes]
rs28593119	0.83[ASN][1000 genomes]
rs57793755	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58143508	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60826690	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73092829	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19769400-19781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:19776200-19779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:19776400-19778800	Enhancers	Osteobl	bone
4	chr4:19776400-19779000	Enhancers	NH-A	brain
5	chr4:19776400-19779200	Enhancers	HUVEC	blood vessel
6	chr4:19777400-19778800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:19777400-19778800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:19777400-19779200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:19777600-19778800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:19777600-19778800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:19777800-19778800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:19778000-19778800	Weak transcription	Fetal Heart	heart
13	chr4:19778000-19779000	Enhancers	NHLF	lung
14	chr4:19778200-19778800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:19778200-19779000	Enhancers	Hela-S3	cervix
16	chr4:19778400-19778800	Enhancers	HMEC	breast
17	chr4:19778400-19779000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:19778400-19779000	Enhancers	Dnd41	blood
19	chr4:19778600-19779000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:19778600-19779000	Flanking Active TSS	NHDF-Ad	bronchial

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