Variant report

Variant	rs13146978
Chromosome Location	chr4:54109346-54109347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11133259	0.89[AFR][1000 genomes]
rs13141050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13148823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128104	0.82[AFR][1000 genomes]
rs2412396	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3986374	0.85[AFR][1000 genomes]
rs4552533	1.00[AFR][1000 genomes]
rs4864448	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864449	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554085	0.93[AFR][1000 genomes]
rs6554088	0.84[AFR][1000 genomes]
rs6825367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855673	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7656204	0.93[AFR][1000 genomes]
rs7663263	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7680828	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7693858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54093800-54110800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:54100200-54111600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:54106600-54120000	Weak transcription	Gastric	stomach
5	chr4:54108000-54111200	Weak transcription	Primary T cells from cord blood	blood
6	chr4:54108000-54114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:54108200-54114200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:54108400-54114200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:54108400-54114200	Weak transcription	Pancreas	Pancrea
10	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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