Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54149656..54152497-chr4:54155266..54158349,3	K562	blood:
2	chr4:54150463..54153230-chr4:54155569..54157322,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002674	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10010450	0.82[AFR][1000 genomes]
rs13137917	0.87[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs13141050	0.95[AFR][1000 genomes]
rs13146978	0.89[AFR][1000 genomes]
rs13148823	0.91[AFR][1000 genomes]
rs13150432	0.87[YRI][hapmap]
rs2128104	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2412396	0.89[AFR][1000 genomes]
rs2412408	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4552533	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864448	0.87[AFR][1000 genomes]
rs4864449	0.91[AFR][1000 genomes]
rs4864738	0.89[AFR][1000 genomes]
rs6554067	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6554076	0.91[AFR][1000 genomes]
rs6554085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554088	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6554097	0.87[ASW][hapmap];1.00[LWK][hapmap]
rs6825367	0.93[AFR][1000 genomes]
rs6832823	0.91[AFR][1000 genomes]
rs6855673	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7656204	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7663263	0.91[AFR][1000 genomes]
rs7680828	0.91[AFR][1000 genomes]
rs7693858	0.93[AFR][1000 genomes]
rs900113	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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