Variant report

Variant	rs13137917
Chromosome Location	chr4:54201031-54201032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10002674	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032378	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs11133259	0.87[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12507175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13150432	0.89[YRI][hapmap]
rs1471596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128104	1.00[YRI][hapmap]
rs4864447	1.00[MKK][hapmap]
rs4864462	0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864764	0.82[YRI][hapmap]
rs4864768	0.86[ASW][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs6554067	1.00[YRI][hapmap]
rs6554088	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554097	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554101	1.00[AMR][1000 genomes]
rs6821777	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823086	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850629	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855673	1.00[YRI][hapmap]
rs7656204	1.00[YRI][hapmap]
rs7687290	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs7697807	0.82[YRI][hapmap]
rs900113	1.00[YRI][hapmap]
rs9684941	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54169800-54216200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:54172600-54215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:54174200-54212600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:54180000-54212800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:54187800-54212800	Weak transcription	Dnd41	blood
7	chr4:54188200-54213800	Weak transcription	Right Ventricle	heart
8	chr4:54188200-54218200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:54188400-54205600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:54188400-54212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:54188600-54202800	Weak transcription	Primary T cells from cord blood	blood
13	chr4:54188600-54215400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:54189600-54212800	Weak transcription	Osteobl	bone
15	chr4:54189800-54206400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:54190000-54213800	Weak transcription	HUVEC	blood vessel
17	chr4:54192200-54212600	Weak transcription	NHDF-Ad	bronchial
18	chr4:54192200-54212800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:54193800-54203000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54193800-54203800	Weak transcription	GM12878-XiMat	blood
21	chr4:54193800-54206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:54193800-54212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:54193800-54213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:54194200-54204800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:54201000-54201200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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