Variant report

Variant	rs6850629
Chromosome Location	chr4:54319011-54319012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10002674	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010450	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032378	0.93[AFR][1000 genomes]
rs12507175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13137917	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13150432	0.84[AFR][1000 genomes]
rs1471596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2137896	0.89[AFR][1000 genomes]
rs4864462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864764	0.89[AFR][1000 genomes]
rs4864768	0.89[AFR][1000 genomes]
rs6554088	1.00[AMR][1000 genomes]
rs6554097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554101	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821777	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847795	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7687290	0.93[AFR][1000 genomes]
rs7697807	0.89[AFR][1000 genomes]
rs9684941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
2	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
3	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
4	chr4:54256600-54319200	Weak transcription	Gastric	stomach
5	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:54268400-54319800	Weak transcription	A549	lung
7	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
12	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
13	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
14	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
16	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:54297400-54319200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:54297400-54319200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:54297400-54319200	Weak transcription	NH-A	brain
20	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:54297600-54329600	Strong transcription	Dnd41	blood
22	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:54302800-54320600	Weak transcription	Psoas Muscle	Psoas
24	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:54311000-54319800	Weak transcription	Brain Angular Gyrus	brain
26	chr4:54311000-54320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:54311200-54319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:54311400-54320800	Weak transcription	Right Ventricle	heart
29	chr4:54311600-54319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:54311600-54319800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr4:54312000-54319600	Weak transcription	Fetal Brain Female	brain
32	chr4:54312000-54321200	Weak transcription	Small Intestine	intestine
33	chr4:54312200-54321000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:54312400-54319400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:54312600-54321000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:54312600-54324800	Weak transcription	Brain Hippocampus Middle	brain
37	chr4:54315000-54319200	Weak transcription	HepG2	liver
38	chr4:54316000-54321600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:54316400-54329200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:54316600-54320000	Strong transcription	Fetal Intestine Small	intestine
41	chr4:54316600-54322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:54316800-54332600	Weak transcription	Esophagus	oesophagus
43	chr4:54317200-54331400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:54317400-54322000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:54317400-54332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:54317600-54319200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:54317800-54320000	Strong transcription	Fetal Stomach	stomach
48	chr4:54317800-54329600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:54318000-54322200	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:54318000-54322400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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