Variant report

Variant	rs10002674
Chromosome Location	chr4:54213099-54213100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54212699..54214471-chr4:54216075..54218598,2	MCF-7	breast:
2	chr16:2011813..2014003-chr4:54211734..54214519,2	K562	blood:

Variant related genes	Relation type
ENSG00000140988	Chromatin interaction
ENSG00000206811	Chromatin interaction
ENSG00000207405	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10010450	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032378	0.82[YRI][hapmap];0.89[AFR][1000 genomes]
rs11133259	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12507175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13137917	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13150432	0.89[YRI][hapmap]
rs1471596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2128104	1.00[YRI][hapmap]
rs2137896	0.80[AFR][1000 genomes]
rs4864462	0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864764	0.82[YRI][hapmap]
rs4864768	0.86[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs6554067	1.00[YRI][hapmap]
rs6554088	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554097	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821777	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823086	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847795	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850629	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855673	1.00[YRI][hapmap]
rs7656204	1.00[YRI][hapmap]
rs7687290	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs7697807	0.82[YRI][hapmap]
rs900113	1.00[YRI][hapmap]
rs9684941	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54169800-54216200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:54172600-54215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:54188200-54213800	Weak transcription	Right Ventricle	heart
5	chr4:54188200-54218200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:54188600-54215400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:54190000-54213800	Weak transcription	HUVEC	blood vessel
9	chr4:54193800-54213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:54201200-54220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:54201400-54215600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:54201800-54215800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:54202200-54226000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:54204200-54213800	Weak transcription	Gastric	stomach
15	chr4:54205200-54213400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:54206600-54220200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:54207000-54213200	Weak transcription	GM12878-XiMat	blood
18	chr4:54207000-54213400	Weak transcription	Lung	lung
19	chr4:54209200-54215400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:54209600-54213200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr4:54210400-54213200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:54210400-54225600	Weak transcription	Small Intestine	intestine
23	chr4:54210600-54213200	Weak transcription	Fetal Thymus	thymus
24	chr4:54211200-54216000	Weak transcription	Thymus	Thymus
25	chr4:54211400-54219200	Weak transcription	Fetal Intestine Small	intestine
26	chr4:54211600-54213200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:54211600-54213800	Weak transcription	Left Ventricle	heart
28	chr4:54211600-54219600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:54211600-54220200	Weak transcription	Fetal Stomach	stomach
30	chr4:54211800-54213400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:54211800-54213400	Weak transcription	Hela-S3	cervix
32	chr4:54211800-54213600	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:54211800-54213800	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:54211800-54217800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:54212000-54213800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr4:54212000-54220600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:54212000-54227200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:54212200-54213600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:54212200-54213800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:54212200-54215400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:54212200-54220800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:54212400-54217800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr4:54212600-54213400	Enhancers	Liver	Liver
44	chr4:54212600-54213600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:54212600-54214200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:54212600-54214200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:54212600-54214200	Enhancers	Fetal Lung	lung
48	chr4:54212600-54219200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:54212800-54213200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:54212800-54213200	Enhancers	NHEK	skin

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