Variant report

Variant	rs9684941
Chromosome Location	chr4:54316495-54316496
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54309949..54312733-chr4:54313192..54317009,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002674	0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006662	0.92[YRI][hapmap]
rs10010450	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032378	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12507175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13137917	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13150432	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1471596	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2117598	0.84[YRI][hapmap]
rs2128104	0.84[YRI][hapmap]
rs2137896	0.91[AFR][1000 genomes]
rs4864462	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4864463	0.84[YRI][hapmap]
rs4864465	0.84[YRI][hapmap]
rs4864764	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4864768	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4864769	0.84[YRI][hapmap]
rs4864775	0.84[YRI][hapmap]
rs6554088	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6554097	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6554101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6821777	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6824775	1.00[YRI][hapmap]
rs6841529	0.85[YRI][hapmap]
rs6847795	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6856534	0.92[YRI][hapmap]
rs7656204	0.84[YRI][hapmap]
rs7687290	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7697807	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs900113	0.84[YRI][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
2	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
3	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
4	chr4:54256600-54319200	Weak transcription	Gastric	stomach
5	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:54268400-54319800	Weak transcription	A549	lung
7	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
8	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
9	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:54276600-54319000	Weak transcription	Lung	lung
12	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:54294000-54325600	Weak transcription	Fetal Heart	heart
18	chr4:54294400-54320600	Weak transcription	HSMMtube	muscle
19	chr4:54295200-54331600	Weak transcription	Hela-S3	cervix
20	chr4:54295400-54316600	Weak transcription	Ovary	ovary
21	chr4:54295600-54316600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:54295600-54319800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:54295600-54339400	Weak transcription	Fetal Brain Male	brain
24	chr4:54296800-54320400	Weak transcription	Brain Germinal Matrix	brain
25	chr4:54297400-54319200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:54297400-54319200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:54297400-54319200	Weak transcription	NH-A	brain
28	chr4:54297600-54326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:54297600-54329600	Strong transcription	Dnd41	blood
30	chr4:54298600-54329600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:54302800-54320600	Weak transcription	Psoas Muscle	Psoas
32	chr4:54305000-54324600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:54311000-54319800	Weak transcription	Brain Angular Gyrus	brain
34	chr4:54311000-54320800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:54311200-54317800	Weak transcription	Fetal Stomach	stomach
36	chr4:54311200-54319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:54311400-54319000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:54311400-54319000	Weak transcription	Fetal Kidney	kidney
39	chr4:54311400-54320800	Weak transcription	Right Ventricle	heart
40	chr4:54311600-54316600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:54311600-54318200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:54311600-54319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:54311600-54319800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr4:54311800-54318600	Weak transcription	GM12878-XiMat	blood
45	chr4:54311800-54318800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:54312000-54316600	Weak transcription	Fetal Intestine Small	intestine
47	chr4:54312000-54318000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:54312000-54318200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:54312000-54318600	Weak transcription	Fetal Thymus	thymus
50	chr4:54312000-54319000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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