Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10029698	1.00[ASW][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs12186239	0.86[EUR][1000 genomes]
rs13103212	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13112444	0.82[TSI][hapmap]
rs13117826	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13131035	0.86[EUR][1000 genomes]
rs13131194	0.81[EUR][1000 genomes]
rs13134746	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13142380	0.82[TSI][hapmap]
rs13147942	0.90[EUR][1000 genomes]
rs13151671	0.83[EUR][1000 genomes]
rs13151797	0.82[EUR][1000 genomes]
rs2705623	0.90[EUR][1000 genomes]
rs28407685	0.83[EUR][1000 genomes]
rs28439108	0.90[EUR][1000 genomes]
rs28447475	0.90[EUR][1000 genomes]
rs28458234	0.83[TSI][hapmap]
rs28502831	0.86[EUR][1000 genomes]
rs28594717	0.81[EUR][1000 genomes]
rs28610346	0.83[EUR][1000 genomes]
rs28629974	0.86[EUR][1000 genomes]
rs28661703	0.85[EUR][1000 genomes]
rs28664715	0.86[EUR][1000 genomes]
rs28706796	0.81[EUR][1000 genomes]
rs28729679	0.90[EUR][1000 genomes]
rs28854225	0.86[EUR][1000 genomes]
rs28886889	0.86[EUR][1000 genomes]
rs35667731	0.81[EUR][1000 genomes]
rs4693788	0.85[CEU][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs71605624	0.87[EUR][1000 genomes]
rs71605686	0.90[EUR][1000 genomes]
rs71605687	0.90[EUR][1000 genomes]
rs71605688	0.86[EUR][1000 genomes]
rs71605691	0.83[EUR][1000 genomes]
rs7683045	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
2	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
3	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose
4	chr4:87753000-87765600	Weak transcription	Esophagus	oesophagus
5	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:87753200-87762000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:87756400-87761800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:87756400-87762200	Weak transcription	NHDF-Ad	bronchial
9	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:87758600-87759800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:87758600-87760400	Genic enhancers	NHEK	skin
12	chr4:87758800-87761800	Enhancers	Fetal Lung	lung
13	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:87759600-87760400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:87759600-87760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:87759600-87760600	Weak transcription	HMEC	breast
17	chr4:87759600-87762200	Weak transcription	NHLF	lung
18	chr4:87759600-87762400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: