Variant report

Variant	rs13148416
Chromosome Location	chr4:21484755-21484756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13101628	0.92[ASN][1000 genomes]
rs13121386	0.90[ASN][1000 genomes]
rs13122564	0.93[ASN][1000 genomes]
rs13122807	0.93[ASN][1000 genomes]
rs13129501	0.88[ASN][1000 genomes]
rs13129942	0.92[ASN][1000 genomes]
rs13129962	0.88[ASN][1000 genomes]
rs13143135	0.90[ASN][1000 genomes]
rs13145622	0.93[ASN][1000 genomes]
rs16871156	0.93[ASN][1000 genomes]
rs17523841	0.87[ASN][1000 genomes]
rs17524714	0.93[ASN][1000 genomes]
rs17524784	0.93[ASN][1000 genomes]
rs17524952	0.93[ASN][1000 genomes]
rs17525063	0.93[ASN][1000 genomes]
rs2874931	0.93[ASN][1000 genomes]
rs34222306	0.93[ASN][1000 genomes]
rs34339769	0.90[ASN][1000 genomes]
rs35032154	0.93[ASN][1000 genomes]
rs35733464	0.87[ASN][1000 genomes]
rs35895330	0.93[ASN][1000 genomes]
rs58751863	0.93[ASN][1000 genomes]
rs66601179	0.93[ASN][1000 genomes]
rs67306339	0.93[ASN][1000 genomes]
rs68049217	0.93[ASN][1000 genomes]
rs68116688	0.93[ASN][1000 genomes]
rs71607078	0.93[ASN][1000 genomes]
rs73252219	0.93[ASN][1000 genomes]
rs7441592	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21481800-21486800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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