Variant report

Variant	rs16871156
Chromosome Location	chr4:21486660-21486661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10013379	0.90[GIH][hapmap]
rs10025003	1.00[GIH][hapmap]
rs10027808	0.90[GIH][hapmap]
rs10516385	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10516388	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10516389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13101628	0.98[ASN][1000 genomes]
rs13103191	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs13104819	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13108860	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs13109655	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13109855	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13121386	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13122564	1.00[ASN][1000 genomes]
rs13122807	1.00[ASN][1000 genomes]
rs13129501	0.95[ASN][1000 genomes]
rs13129942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13129962	0.95[ASN][1000 genomes]
rs13135994	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13136002	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13137136	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13143135	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs13144924	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13145622	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13148416	0.93[ASN][1000 genomes]
rs1460480	0.90[GIH][hapmap]
rs1460481	0.90[GIH][hapmap]
rs1495501	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1495502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1495503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1495514	1.00[GIH][hapmap]
rs16871115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16871218	1.00[GIH][hapmap]
rs16871241	1.00[GIH][hapmap]
rs16871284	0.90[GIH][hapmap]
rs17464578	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17464752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17464793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17464828	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs17465022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17465591	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17523841	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17523876	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17524637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17524672	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17524714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17524784	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17524952	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17525063	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1903321	1.00[GIH][hapmap]
rs2874930	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2874931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34222306	1.00[ASN][1000 genomes]
rs34339769	0.97[ASN][1000 genomes]
rs35032154	1.00[ASN][1000 genomes]
rs35733464	0.93[ASN][1000 genomes]
rs35895330	1.00[ASN][1000 genomes]
rs58751863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66601179	1.00[ASN][1000 genomes]
rs67306339	1.00[ASN][1000 genomes]
rs68049217	1.00[ASN][1000 genomes]
rs68116688	1.00[ASN][1000 genomes]
rs6827314	1.00[GIH][hapmap]
rs71607078	1.00[ASN][1000 genomes]
rs73252219	1.00[ASN][1000 genomes]
rs7441592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9685466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9991409	1.00[GIH][hapmap]
rs9991717	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv829879	chr4:21418568-21611002	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998481	chr4:21421945-21608805	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21481800-21486800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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