Variant report

Variant	rs13148701
Chromosome Location	chr4:85246081-85246082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10031655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10033509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11934759	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12331554	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13109014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393921	0.88[ASN][1000 genomes]
rs28575260	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868880	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851784	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7662217	1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1001364	chr4:85193054-85252321	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv998617	chr4:85193054-85255409	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85239600-85246600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85244800-85247200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:85244800-85247600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:85245000-85246800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:85245000-85247000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:85245000-85247000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:85245200-85247200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:85245200-85247200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:85245400-85246400	Enhancers	Brain Hippocampus Middle	brain
10	chr4:85245400-85246400	Enhancers	Fetal Stomach	stomach
11	chr4:85245400-85246600	Enhancers	Brain Substantia Nigra	brain
12	chr4:85245400-85246800	Enhancers	Brain Germinal Matrix	brain
13	chr4:85245400-85247000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:85245600-85246800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr4:85245800-85246600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:85245800-85246600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:85246000-85246400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:85246000-85246400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:85246000-85246600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr4:85246000-85246800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr4:85246000-85247200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:85246000-85247200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links