Variant report

Variant	rs28393921
Chromosome Location	chr4:85261732-85261733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10033509	0.88[ASN][1000 genomes]
rs11934759	0.88[ASN][1000 genomes]
rs12331554	0.88[ASN][1000 genomes]
rs13109014	0.88[ASN][1000 genomes]
rs13117585	0.88[ASN][1000 genomes]
rs13148701	0.88[ASN][1000 genomes]
rs17008656	0.88[ASN][1000 genomes]
rs28575260	0.88[ASN][1000 genomes]
rs2868880	0.88[ASN][1000 genomes]
rs4478180	0.88[ASN][1000 genomes]
rs6851784	0.88[ASN][1000 genomes]
rs7662217	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85259800-85263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:85259800-85263400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:85260200-85263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:85260400-85261800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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