Variant report

Variant	rs13148881
Chromosome Location	chr4:139396693-139396694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011056	1.00[ASN][1000 genomes]
rs10016152	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10020002	0.98[ASN][1000 genomes]
rs10024247	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10032828	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11728649	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12507018	0.94[ASN][1000 genomes]
rs13101897	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13108353	1.00[ASN][1000 genomes]
rs13110847	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116878	0.97[ASN][1000 genomes]
rs13125287	1.00[ASN][1000 genomes]
rs17305858	1.00[ASN][1000 genomes]
rs2976477	0.88[ASN][1000 genomes]
rs4863553	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034642	chr4:138883444-139870127	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv537285	chr4:138883444-139870127	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1028857	chr4:139060158-139964404	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv880156	chr4:139079966-139836353	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:139395800-139397400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:139396400-139397000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:139396400-139397200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:139396400-139397200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:139396400-139397400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:139396600-139397000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:139396600-139397000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:139396600-139397200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:139396600-139397200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:139396600-139397200	Enhancers	HSMMtube	muscle
11	chr4:139396600-139397400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:139396600-139397400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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