Variant report

Variant	rs2976477
Chromosome Location	chr4:139398829-139398830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10011056	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10016152	0.86[ASN][1000 genomes]
rs10020002	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10024247	0.81[ASN][1000 genomes]
rs10032828	0.86[ASN][1000 genomes]
rs12507018	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13101897	0.85[ASN][1000 genomes]
rs13108353	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13110847	0.88[ASN][1000 genomes]
rs13116878	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13125287	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13148881	0.88[ASN][1000 genomes]
rs17305858	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4863553	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034642	chr4:138883444-139870127	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv537285	chr4:138883444-139870127	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1028857	chr4:139060158-139964404	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv880156	chr4:139079966-139836353	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:139397400-139401800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:139398800-139399000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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