Variant report

Variant	rs13149010
Chromosome Location	chr4:120726047-120726048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10032434	0.89[ASN][1000 genomes]
rs17006113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006546	0.92[ASN][1000 genomes]
rs17006665	0.91[ASN][1000 genomes]
rs2202273	0.89[ASN][1000 genomes]
rs2304799	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429734	0.83[ASN][1000 genomes]
rs35920721	0.89[ASN][1000 genomes]
rs4505807	0.89[ASN][1000 genomes]
rs62319694	0.89[ASN][1000 genomes]
rs6819871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72908412	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910489	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3443538	chr4:120725398-120755486	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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