Variant report

Variant	rs13149585
Chromosome Location	chr4:175301634-175301635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:175301271-175301734	H1-hESC	embryonic stem cell:	n/a	n/a
2	SPI1	chr4:175301451-175301771	K562	blood:	n/a	n/a
3	FOXA2	chr4:175301243-175301668	A549	lung:	n/a	n/a
4	SPI1	chr4:175301475-175301763	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000249875	TF binding region

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11725800	0.89[ASN][1000 genomes]
rs11727574	0.90[ASN][1000 genomes]
rs11732436	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11732586	0.90[ASN][1000 genomes]
rs11735455	0.90[ASN][1000 genomes]
rs12233848	0.83[ASN][1000 genomes]
rs13101376	0.90[ASN][1000 genomes]
rs13102962	0.90[ASN][1000 genomes]
rs13107351	0.89[ASN][1000 genomes]
rs13108930	0.89[ASN][1000 genomes]
rs13109756	0.90[ASN][1000 genomes]
rs13120534	0.90[ASN][1000 genomes]
rs13122946	0.89[ASN][1000 genomes]
rs13126536	0.88[ASN][1000 genomes]
rs13132617	0.89[ASN][1000 genomes]
rs13135662	0.83[ASN][1000 genomes]
rs13140627	0.89[ASN][1000 genomes]
rs13145787	0.88[ASN][1000 genomes]
rs13146439	0.89[ASN][1000 genomes]
rs13149810	0.89[ASN][1000 genomes]
rs13150656	0.89[ASN][1000 genomes]
rs13152348	0.80[ASN][1000 genomes]
rs1922383	0.90[ASN][1000 genomes]
rs1922384	0.89[ASN][1000 genomes]
rs28519075	0.90[ASN][1000 genomes]
rs28657489	0.89[ASN][1000 genomes]
rs34037587	0.89[ASN][1000 genomes]
rs34054930	0.85[ASN][1000 genomes]
rs34135350	0.85[ASN][1000 genomes]
rs34175211	0.86[ASN][1000 genomes]
rs34400328	0.92[ASN][1000 genomes]
rs34421418	0.91[ASN][1000 genomes]
rs34425026	0.92[ASN][1000 genomes]
rs34572193	0.88[ASN][1000 genomes]
rs34592304	0.85[ASN][1000 genomes]
rs34604934	0.89[ASN][1000 genomes]
rs34609084	0.89[ASN][1000 genomes]
rs34674779	0.80[ASN][1000 genomes]
rs34717346	0.91[ASN][1000 genomes]
rs34795808	0.90[ASN][1000 genomes]
rs34833822	0.88[ASN][1000 genomes]
rs35078417	0.90[ASN][1000 genomes]
rs35211627	0.84[ASN][1000 genomes]
rs35263478	0.89[ASN][1000 genomes]
rs35295528	0.88[ASN][1000 genomes]
rs35326753	0.83[ASN][1000 genomes]
rs35347093	0.90[ASN][1000 genomes]
rs35423027	0.86[ASN][1000 genomes]
rs35539859	0.87[ASN][1000 genomes]
rs35635103	0.92[ASN][1000 genomes]
rs35663303	0.88[ASN][1000 genomes]
rs35697391	0.91[ASN][1000 genomes]
rs35706347	0.80[ASN][1000 genomes]
rs35760448	0.90[ASN][1000 genomes]
rs35794791	0.82[ASN][1000 genomes]
rs35920928	0.89[ASN][1000 genomes]
rs35931018	0.82[ASN][1000 genomes]
rs35978128	0.89[ASN][1000 genomes]
rs36122870	0.89[ASN][1000 genomes]
rs3980460	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131102	0.91[ASN][1000 genomes]
rs4131103	0.90[ASN][1000 genomes]
rs4273447	0.90[ASN][1000 genomes]
rs4518223	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4518224	0.86[ASN][1000 genomes]
rs4568217	0.90[ASN][1000 genomes]
rs4695776	0.91[ASN][1000 genomes]
rs4695929	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62335849	0.91[ASN][1000 genomes]
rs62335856	0.91[ASN][1000 genomes]
rs62335857	0.92[ASN][1000 genomes]
rs62337061	0.90[ASN][1000 genomes]
rs62337062	0.90[ASN][1000 genomes]
rs62337063	0.90[ASN][1000 genomes]
rs62337086	0.89[ASN][1000 genomes]
rs62337087	0.89[ASN][1000 genomes]
rs6553785	0.92[ASN][1000 genomes]
rs6553786	0.92[ASN][1000 genomes]
rs6553789	0.90[ASN][1000 genomes]
rs6553790	0.90[ASN][1000 genomes]
rs6553791	0.90[ASN][1000 genomes]
rs67728476	0.90[ASN][1000 genomes]
rs6812366	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6822535	0.87[ASN][1000 genomes]
rs6827853	0.88[ASN][1000 genomes]
rs6835446	0.92[ASN][1000 genomes]
rs6852435	0.92[ASN][1000 genomes]
rs6853004	0.90[ASN][1000 genomes]
rs6853166	0.90[ASN][1000 genomes]
rs6853181	0.90[ASN][1000 genomes]
rs7654427	0.90[ASN][1000 genomes]
rs7655606	0.90[ASN][1000 genomes]
rs7656628	0.92[ASN][1000 genomes]
rs7665426	0.89[ASN][1000 genomes]
rs7665708	0.90[ASN][1000 genomes]
rs7667325	0.90[ASN][1000 genomes]
rs7667374	0.90[ASN][1000 genomes]
rs7667642	0.90[ASN][1000 genomes]
rs7671492	0.92[ASN][1000 genomes]
rs7672838	0.90[ASN][1000 genomes]
rs7677994	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680564	0.90[ASN][1000 genomes]
rs7687802	0.90[ASN][1000 genomes]
rs7688229	0.87[ASN][1000 genomes]
rs7689422	0.90[ASN][1000 genomes]
rs7689484	0.91[ASN][1000 genomes]
rs7691061	0.90[ASN][1000 genomes]
rs7695912	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175291600-175302000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:175297000-175304400	Weak transcription	K562	blood
3	chr4:175297400-175304800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:175299000-175302000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:175299000-175302600	Weak transcription	Stomach Mucosa	stomach
6	chr4:175299000-175303200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:175300400-175303200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:175300400-175303400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:175300600-175302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:175300600-175303600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:175300600-175305000	Weak transcription	A549	lung
12	chr4:175300800-175302800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:175301200-175301800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:175301200-175305000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:175301400-175302000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:175301400-175302000	Enhancers	NHEK	skin
17	chr4:175301400-175302200	Enhancers	Placenta	Placenta
18	chr4:175301400-175303600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:175301600-175302000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:175301600-175302000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:175301600-175303000	Enhancers	H1 Cell Line	embryonic stem cell

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