Variant report

Variant	rs13152348
Chromosome Location	chr14:25575659-25575660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11725800	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11727574	0.90[ASN][1000 genomes]
rs11732586	0.90[ASN][1000 genomes]
rs11735455	0.90[ASN][1000 genomes]
rs12233848	0.81[ASN][1000 genomes]
rs13101376	0.90[ASN][1000 genomes]
rs13102962	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13107351	0.91[ASN][1000 genomes]
rs13108930	0.91[ASN][1000 genomes]
rs13109756	0.90[ASN][1000 genomes]
rs13112972	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13119359	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13120534	0.90[ASN][1000 genomes]
rs13122946	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13126536	0.88[ASN][1000 genomes]
rs13132617	0.91[ASN][1000 genomes]
rs13135662	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13140627	0.91[ASN][1000 genomes]
rs13145787	0.88[ASN][1000 genomes]
rs13146439	0.91[ASN][1000 genomes]
rs13149585	0.80[ASN][1000 genomes]
rs13149810	0.91[ASN][1000 genomes]
rs13150656	0.91[ASN][1000 genomes]
rs1922383	0.90[ASN][1000 genomes]
rs1922384	0.88[ASN][1000 genomes]
rs28519075	0.90[ASN][1000 genomes]
rs28657489	0.88[ASN][1000 genomes]
rs34037587	0.91[ASN][1000 genomes]
rs34054930	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34135350	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34175211	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34243669	0.80[ASN][1000 genomes]
rs34400328	0.88[ASN][1000 genomes]
rs34421418	0.86[ASN][1000 genomes]
rs34425026	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34572193	0.90[ASN][1000 genomes]
rs34592304	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34604934	0.91[ASN][1000 genomes]
rs34609084	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34674779	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34717346	0.86[ASN][1000 genomes]
rs34795808	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34833822	0.90[ASN][1000 genomes]
rs35045909	0.85[ASN][1000 genomes]
rs35078417	0.90[ASN][1000 genomes]
rs35211627	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35216513	0.87[ASN][1000 genomes]
rs35263478	0.91[ASN][1000 genomes]
rs35295528	0.90[ASN][1000 genomes]
rs35326753	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35347093	0.90[ASN][1000 genomes]
rs35423027	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35539859	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35635103	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35663303	0.90[ASN][1000 genomes]
rs35697391	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35706347	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35760448	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35794791	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35920928	0.89[ASN][1000 genomes]
rs35931018	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35978128	0.91[ASN][1000 genomes]
rs36122870	0.91[ASN][1000 genomes]
rs3980460	0.80[ASN][1000 genomes]
rs4131102	0.88[ASN][1000 genomes]
rs4131103	0.87[ASN][1000 genomes]
rs4273447	0.90[ASN][1000 genomes]
rs4399961	0.81[AMR][1000 genomes]
rs4518223	0.89[ASN][1000 genomes]
rs4518224	0.89[ASN][1000 genomes]
rs4558849	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4568217	0.90[ASN][1000 genomes]
rs4695929	0.80[ASN][1000 genomes]
rs62335849	0.86[ASN][1000 genomes]
rs62335856	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62335857	0.88[ASN][1000 genomes]
rs62337061	0.90[ASN][1000 genomes]
rs62337062	0.90[ASN][1000 genomes]
rs62337063	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62337086	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62337087	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6553785	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6553786	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6553789	0.90[ASN][1000 genomes]
rs6553790	0.90[ASN][1000 genomes]
rs6553791	0.90[ASN][1000 genomes]
rs67728476	0.90[ASN][1000 genomes]
rs6822535	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6827853	0.90[ASN][1000 genomes]
rs6835446	0.88[ASN][1000 genomes]
rs6852435	0.88[ASN][1000 genomes]
rs6853004	0.90[ASN][1000 genomes]
rs6853166	0.90[ASN][1000 genomes]
rs6853181	0.90[ASN][1000 genomes]
rs7654427	0.90[ASN][1000 genomes]
rs7655606	0.90[ASN][1000 genomes]
rs7656628	0.88[ASN][1000 genomes]
rs7665426	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7665708	0.90[ASN][1000 genomes]
rs7667325	0.90[ASN][1000 genomes]
rs7667374	0.90[ASN][1000 genomes]
rs7667642	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7671492	0.88[ASN][1000 genomes]
rs7672838	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7677994	0.80[ASN][1000 genomes]
rs7680564	0.90[ASN][1000 genomes]
rs7687802	0.90[ASN][1000 genomes]
rs7688229	0.90[ASN][1000 genomes]
rs7689422	0.90[ASN][1000 genomes]
rs7689484	0.88[ASN][1000 genomes]
rs7691061	0.90[ASN][1000 genomes]
rs7693269	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7695912	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25573000-25577600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:25573200-25578000	Weak transcription	Fetal Lung	lung
3	chr14:25573400-25577600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:25573400-25577800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:25573800-25577800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:25574400-25577600	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:25574400-25578000	Weak transcription	Fetal Muscle Trunk	muscle

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