Variant report

Variant	rs13151500
Chromosome Location	chr4:7751066-7751067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13115302	0.84[ASN][1000 genomes]
rs17466783	0.84[ASN][1000 genomes]
rs17466832	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34277472	0.89[AMR][1000 genomes]
rs34769859	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35384319	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv878574	chr4:7715181-7751894	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv878575	chr4:7715181-7767755	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7726600-7757200	Weak transcription	Fetal Brain Female	brain
2	chr4:7740200-7765000	Weak transcription	Aorta	Aorta
3	chr4:7740600-7762400	Weak transcription	Pancreas	Pancrea
4	chr4:7741000-7757800	Weak transcription	Lung	lung
5	chr4:7741400-7755000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:7741400-7755200	Weak transcription	Brain Germinal Matrix	brain
7	chr4:7744000-7752800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:7746000-7751400	Weak transcription	HMEC	breast
9	chr4:7746000-7752200	Weak transcription	Esophagus	oesophagus
10	chr4:7746000-7753200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:7746000-7758800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:7746200-7757200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:7746200-7758600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:7746200-7772000	Weak transcription	Brain Anterior Caudate	brain
15	chr4:7746400-7752400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr4:7746400-7757800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:7747200-7761800	Weak transcription	Colonic Mucosa	Colon
18	chr4:7748800-7752000	Weak transcription	Fetal Stomach	stomach
19	chr4:7748800-7756200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:7749000-7751400	Weak transcription	Osteobl	bone
21	chr4:7749400-7760000	Weak transcription	HSMMtube	muscle
22	chr4:7749400-7765600	Weak transcription	Fetal Brain Male	brain
23	chr4:7749400-7767000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:7749600-7752200	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:7749600-7759000	Weak transcription	Spleen	Spleen
26	chr4:7749800-7752000	Weak transcription	Adipose Nuclei	Adipose
27	chr4:7749800-7757000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:7750000-7751800	Enhancers	HepG2	liver
29	chr4:7750600-7751400	Enhancers	A549	lung
30	chr4:7750600-7752200	Enhancers	Primary T cells from cord blood	blood
31	chr4:7750800-7752400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr4:7750800-7755000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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