Variant report

Variant	rs13152126
Chromosome Location	chr4:2714322-2714323
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:2536163..2539003-chr4:2712977..2717563,4	MCF-7	breast:
2	chr4:2536351..2537886-chr4:2713685..2715325,2	MCF-7	breast:
3	chr4:2709028..2711083-chr4:2714281..2716848,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13125136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13129679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34574967	1.00[AMR][1000 genomes]
rs35224370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71608211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71608217	1.00[AFR][1000 genomes]
rs71608219	1.00[AMR][1000 genomes]
rs71608242	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948659	chr4:1828867-2815632	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1003409	chr4:2541224-2724199	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv878443	chr4:2598799-2731331	Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1005116	chr4:2633935-2812340	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv470001	chr4:2680515-2723531	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv593434	chr4:2688719-2737140	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv878444	chr4:2689449-2861090	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv470002	chr4:2701098-2836628	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv878445	chr4:2704046-2831383	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv878446	chr4:2710644-2810634	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2638200-2724400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2673600-2714400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:2687800-2715200	Weak transcription	Right Atrium	heart
4	chr4:2699400-2715200	Weak transcription	Fetal Heart	heart
5	chr4:2700200-2715200	Strong transcription	Fetal Intestine Small	intestine
6	chr4:2701400-2718000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:2702200-2723400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:2702400-2717200	Weak transcription	Psoas Muscle	Psoas
9	chr4:2704000-2716000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:2704600-2722000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:2704600-2747800	Weak transcription	Hela-S3	cervix
12	chr4:2705000-2715200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:2705000-2723400	Weak transcription	Fetal Brain Male	brain
14	chr4:2705000-2730600	Weak transcription	HMEC	breast
15	chr4:2705400-2715000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:2705400-2715200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:2705400-2715200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:2705400-2715200	Weak transcription	Stomach Mucosa	stomach
19	chr4:2705400-2715200	Weak transcription	K562	blood
20	chr4:2705400-2715400	Weak transcription	NHDF-Ad	bronchial
21	chr4:2705400-2717000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:2705400-2717200	Weak transcription	Brain Substantia Nigra	brain
23	chr4:2705400-2717200	Weak transcription	HSMM	muscle
24	chr4:2705400-2717400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:2705400-2722000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:2705400-2736600	Weak transcription	Fetal Kidney	kidney
27	chr4:2705600-2715200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:2705600-2715200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:2705600-2715200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:2705600-2715200	Weak transcription	NHEK	skin
31	chr4:2705600-2717400	Weak transcription	Aorta	Aorta
32	chr4:2705800-2715000	Weak transcription	HUVEC	blood vessel
33	chr4:2705800-2715200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:2705800-2715200	Weak transcription	NHLF	lung
35	chr4:2705800-2715400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:2706000-2715400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:2706000-2715800	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:2706200-2715200	Weak transcription	Right Ventricle	heart
39	chr4:2706200-2715800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:2706400-2715200	Weak transcription	Pancreas	Pancrea
41	chr4:2706400-2715400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:2706400-2717400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr4:2706600-2715200	Weak transcription	Primary T cells from cord blood	blood
44	chr4:2706600-2715200	Weak transcription	Brain Anterior Caudate	brain
45	chr4:2706600-2715200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:2706600-2715200	Weak transcription	Lung	lung
47	chr4:2706600-2715400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:2706600-2715600	Weak transcription	Brain Angular Gyrus	brain
49	chr4:2706600-2717800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:2706800-2715200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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