Variant report

Variant	rs35224370
Chromosome Location	chr4:2545089-2545090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:2537379..2540916-chr4:2543500..2546567,3	K562	blood:
2	chr4:2537290..2538917-chr4:2542790..2545284,3	MCF-7	breast:
3	chr4:2536704..2540374-chr4:2543139..2545693,3	MCF-7	breast:
4	chr4:2540945..2542965-chr4:2544286..2548516,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13125136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13129679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34574967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35546272	0.81[EUR][1000 genomes]
rs35670376	1.00[AMR][1000 genomes]
rs71608203	1.00[AFR][1000 genomes]
rs71608205	1.00[AFR][1000 genomes]
rs71608211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71608217	1.00[AFR][1000 genomes]
rs71608219	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432548	chr4:1725009-2652494	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv948659	chr4:1828867-2815632	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
3	nsv593420	chr4:2533532-2546123	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
4	nsv593421	chr4:2533532-2550472	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
5	nsv593422	chr4:2535701-2550472	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
6	esv1792246	chr4:2537403-2559990	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
7	esv1836982	chr4:2537403-2559990	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
8	nsv593429	chr4:2537795-2550472	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	20 gene(s)	inside rSNPs	n/a
9	nsv593431	chr4:2537994-2546123	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	19 gene(s)	inside rSNPs	n/a
10	nsv593433	chr4:2538154-2550472	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
11	nsv1003409	chr4:2541224-2724199	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2539600-2554800	Weak transcription	Esophagus	oesophagus
2	chr4:2539600-2561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:2539600-2569400	Weak transcription	Gastric	stomach
4	chr4:2539800-2547400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:2539800-2547800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:2539800-2548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:2539800-2571600	Weak transcription	HSMMtube	muscle
8	chr4:2539800-2572200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:2539800-2572400	Weak transcription	Aorta	Aorta
10	chr4:2540000-2547000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:2540000-2547200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:2540000-2547200	Weak transcription	NHDF-Ad	bronchial
13	chr4:2540000-2548000	Weak transcription	A549	lung
14	chr4:2540000-2558800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:2540000-2562200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:2540000-2562800	Weak transcription	Fetal Intestine Large	intestine
17	chr4:2540000-2565400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:2540000-2569400	Weak transcription	HSMM	muscle
19	chr4:2540000-2571200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:2540000-2571800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:2540000-2585200	Weak transcription	Osteobl	bone
22	chr4:2540200-2547600	Weak transcription	Hela-S3	cervix
23	chr4:2540200-2560200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:2540200-2560800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:2540400-2545200	Weak transcription	HUVEC	blood vessel
26	chr4:2540400-2550800	Weak transcription	HMEC	breast
27	chr4:2540400-2555400	Weak transcription	Primary B cells from cord blood	blood
28	chr4:2540400-2563400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr4:2540400-2576600	Weak transcription	NHLF	lung
30	chr4:2540800-2545800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:2540800-2567400	Weak transcription	Placenta	Placenta
32	chr4:2541000-2569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:2541200-2545600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:2541200-2549400	Weak transcription	Adipose Nuclei	Adipose
35	chr4:2541200-2550200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:2541200-2560800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:2541200-2561200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:2541200-2562000	Weak transcription	Primary T cells from cord blood	blood
39	chr4:2541200-2566200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:2541200-2572200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr4:2541200-2575200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:2541200-2575400	Weak transcription	Fetal Lung	lung
43	chr4:2541400-2546200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:2541400-2546200	Strong transcription	Fetal Stomach	stomach
45	chr4:2541400-2546400	Weak transcription	Brain Germinal Matrix	brain
46	chr4:2541400-2546800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr4:2541400-2548800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr4:2541400-2549200	Weak transcription	Left Ventricle	heart
49	chr4:2541400-2555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:2541600-2545800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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