Variant report

Variant	rs35546272
Chromosome Location	chr4:2631674-2631675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:2443170..2444011-chr4:2631001..2632008,3	MCF-7	breast:
2	chr4:2631087..2633393-chr4:2638925..2641589,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13125136	0.90[EUR][1000 genomes]
rs13129679	0.81[EUR][1000 genomes]
rs17824109	0.86[ASN][1000 genomes]
rs34574967	0.81[EUR][1000 genomes]
rs35224370	0.81[EUR][1000 genomes]
rs71608211	1.00[EUR][1000 genomes]
rs71608219	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432548	chr4:1725009-2652494	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv948659	chr4:1828867-2815632	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
3	nsv1003409	chr4:2541224-2724199	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1010709	chr4:2580107-2674624	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv878443	chr4:2598799-2731331	Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv829839	chr4:2624422-2659610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2620000-2632000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:2622200-2648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:2622200-2652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:2623600-2639400	Weak transcription	Stomach Mucosa	stomach
5	chr4:2624200-2632600	Weak transcription	Psoas Muscle	Psoas
6	chr4:2624400-2648200	Weak transcription	Hela-S3	cervix
7	chr4:2626200-2661000	Strong transcription	Fetal Stomach	stomach
8	chr4:2626400-2632800	Strong transcription	Fetal Intestine Small	intestine
9	chr4:2626600-2636200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:2626600-2641600	Weak transcription	Fetal Brain Male	brain
11	chr4:2626600-2646600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:2626600-2647400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:2626600-2653400	Strong transcription	Placenta	Placenta
14	chr4:2626600-2654600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:2626800-2634200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:2626800-2646600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr4:2626800-2667800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:2626800-2668400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:2627000-2633600	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr4:2627000-2634800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:2627000-2634800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:2627000-2634800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:2627000-2634800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:2627000-2635200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:2627000-2635400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:2627000-2636000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:2627000-2636800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:2627000-2637200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr4:2627000-2642400	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:2627000-2642600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:2627000-2643400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr4:2627000-2646600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:2627000-2646600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:2627000-2647000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:2627000-2647200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr4:2627000-2647400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr4:2627000-2651000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:2627000-2652600	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr4:2627000-2653400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:2627000-2654000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:2627000-2654200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr4:2627000-2654200	Strong transcription	Dnd41	blood
43	chr4:2627000-2654800	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:2627200-2634800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:2627200-2635600	Weak transcription	Fetal Heart	heart
46	chr4:2627200-2636200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:2627200-2636400	Strong transcription	Primary B cells from cord blood	blood
48	chr4:2627200-2646600	Strong transcription	Fetal Muscle Leg	muscle
49	chr4:2627200-2654000	Strong transcription	Adipose Nuclei	Adipose
50	chr4:2627200-2654600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links