Variant report

Variant	rs13154055
Chromosome Location	chr5:112971516-112971517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10050530	0.83[EUR][1000 genomes]
rs10057321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064031	0.83[EUR][1000 genomes]
rs10477502	0.84[EUR][1000 genomes]
rs13170795	0.83[AMR][1000 genomes]
rs13174075	0.86[CHB][hapmap]
rs2115208	0.83[EUR][1000 genomes]
rs2115209	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2195377	0.83[EUR][1000 genomes]
rs2217296	0.83[EUR][1000 genomes]
rs2248930	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs28519541	0.84[EUR][1000 genomes]
rs348928	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs348929	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs348930	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs348931	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs348932	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs348947	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs348956	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs348961	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs348962	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs348963	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs364738	0.89[CEU][hapmap]
rs367943	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs444322	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs455435	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs460079	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs463167	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs463249	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs644154	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs6594746	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859521	0.84[EUR][1000 genomes]
rs6881949	0.83[AMR][1000 genomes]
rs728915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728525	0.83[EUR][1000 genomes]
rs9326900	0.83[EUR][1000 genomes]
rs9326902	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv882725	chr5:112947050-112989901	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760970	chr5:112956600-112980621	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2763485	chr5:112956600-112980621	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599401	chr5:112963290-112981528	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv471040	chr5:112963487-112981528	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519536	chr5:112963488-112978571	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv599402	chr5:112963488-112981528	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv599403	chr5:112963488-112989901	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv599404	chr5:112965145-112981528	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv462388	chr5:112965145-112982650	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv599405	chr5:112965145-112982650	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv462389	chr5:112965930-112982650	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv599406	chr5:112965930-112982650	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112971200-112974200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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