Variant report

Variant	rs6881949
Chromosome Location	chr5:112974340-112974341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10057321	0.83[AMR][1000 genomes]
rs10059373	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447258	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10478138	0.94[ASN][1000 genomes]
rs11957573	0.83[ASN][1000 genomes]
rs12109672	0.83[ASN][1000 genomes]
rs13154055	0.83[AMR][1000 genomes]
rs13170795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178544	0.94[ASN][1000 genomes]
rs13182972	0.82[CEU][hapmap]
rs17135859	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17389165	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs1871910	0.83[ASN][1000 genomes]
rs2016167	0.83[ASN][1000 genomes]
rs2115209	0.81[AMR][1000 genomes]
rs2195367	1.00[ASN][1000 genomes]
rs2416323	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416324	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416325	0.94[ASN][1000 genomes]
rs2416329	0.94[ASN][1000 genomes]
rs34045110	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34397886	0.83[ASN][1000 genomes]
rs34699212	0.83[ASN][1000 genomes]
rs34783938	0.94[ASN][1000 genomes]
rs34817468	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039050	0.84[ASN][1000 genomes]
rs35552641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329014	0.94[ASN][1000 genomes]
rs4461623	0.89[ASN][1000 genomes]
rs4705467	0.94[ASN][1000 genomes]
rs4705571	0.83[ASN][1000 genomes]
rs4705572	0.83[ASN][1000 genomes]
rs57691496	0.83[ASN][1000 genomes]
rs66580212	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867579	0.87[CEU][hapmap]
rs6871934	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs6890874	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs71577455	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705489	0.83[ASN][1000 genomes]
rs7706721	0.82[CEU][hapmap]
rs7707681	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4961	chr5:112945908-112991152	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv882725	chr5:112947050-112989901	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760970	chr5:112956600-112980621	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2763485	chr5:112956600-112980621	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599401	chr5:112963290-112981528	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv471040	chr5:112963487-112981528	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519536	chr5:112963488-112978571	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv599402	chr5:112963488-112981528	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv599403	chr5:112963488-112989901	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv599404	chr5:112965145-112981528	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv462388	chr5:112965145-112982650	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv599405	chr5:112965145-112982650	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv462389	chr5:112965930-112982650	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv599406	chr5:112965930-112982650	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112974200-112974600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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