Variant report

Variant	rs4461623
Chromosome Location	chr5:113024960-113024961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10059373	0.89[ASN][1000 genomes]
rs10067803	0.89[ASN][1000 genomes]
rs10478138	0.94[ASN][1000 genomes]
rs11957573	0.83[ASN][1000 genomes]
rs12109672	0.83[ASN][1000 genomes]
rs13170795	0.89[ASN][1000 genomes]
rs13178544	0.94[ASN][1000 genomes]
rs1871910	0.83[ASN][1000 genomes]
rs2016167	0.83[ASN][1000 genomes]
rs2162846	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2195367	0.89[ASN][1000 genomes]
rs2416323	0.89[ASN][1000 genomes]
rs2416324	0.89[ASN][1000 genomes]
rs2416325	0.94[ASN][1000 genomes]
rs2416328	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2416329	0.94[ASN][1000 genomes]
rs34045110	0.89[ASN][1000 genomes]
rs34397886	0.83[ASN][1000 genomes]
rs34699212	0.83[ASN][1000 genomes]
rs34783938	0.94[ASN][1000 genomes]
rs34817468	0.89[ASN][1000 genomes]
rs35039050	0.84[ASN][1000 genomes]
rs35552641	0.89[ASN][1000 genomes]
rs4329014	0.94[ASN][1000 genomes]
rs4705467	0.94[ASN][1000 genomes]
rs4705571	0.83[ASN][1000 genomes]
rs4705572	0.83[ASN][1000 genomes]
rs57691496	0.83[ASN][1000 genomes]
rs66580212	0.89[ASN][1000 genomes]
rs6881949	0.89[ASN][1000 genomes]
rs71577455	0.89[ASN][1000 genomes]
rs7705489	0.83[ASN][1000 genomes]
rs7707681	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113016600-113026000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:113018800-113027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:113019000-113028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:113023600-113027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:113024000-113025200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:113024800-113025200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:113024800-113025400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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