Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10059373	0.84[ASN][1000 genomes]
rs10478138	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12109672	0.83[EUR][1000 genomes]
rs13170795	0.84[ASN][1000 genomes]
rs13178544	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1871910	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2195367	0.84[ASN][1000 genomes]
rs2416323	0.84[ASN][1000 genomes]
rs2416324	0.84[ASN][1000 genomes]
rs2416325	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2416329	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34045110	0.84[ASN][1000 genomes]
rs34397886	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34699212	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34783938	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34817468	0.84[ASN][1000 genomes]
rs35552641	0.84[ASN][1000 genomes]
rs4329014	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4461623	0.84[ASN][1000 genomes]
rs4705467	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57691496	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66580212	0.84[ASN][1000 genomes]
rs6881949	0.84[ASN][1000 genomes]
rs71577455	0.84[ASN][1000 genomes]
rs7707681	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113012600-113018400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:113014600-113016600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:113015200-113018000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:113015200-113018400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:113015400-113018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:113015400-113018000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:113015400-113018400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:113015600-113018000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:113015600-113018400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:113015800-113018400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:113016000-113018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:113016000-113018800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:113016400-113016600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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