Variant report
| Variant | rs10059373 |
|---|---|
| Chromosome Location | chr5:113002991-113002992 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10447258 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10478138 | 0.94[ASN][1000 genomes] |
| rs11957573 | 0.83[ASN][1000 genomes] |
| rs12109672 | 0.83[ASN][1000 genomes] |
| rs13170795 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13178544 | 0.94[ASN][1000 genomes] |
| rs17135859 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1871910 | 0.83[ASN][1000 genomes] |
| rs2016167 | 0.83[ASN][1000 genomes] |
| rs2195367 | 1.00[ASN][1000 genomes] |
| rs2416323 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2416324 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2416325 | 0.94[ASN][1000 genomes] |
| rs2416329 | 0.94[ASN][1000 genomes] |
| rs34045110 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34397886 | 0.83[ASN][1000 genomes] |
| rs34699212 | 0.83[ASN][1000 genomes] |
| rs34783938 | 0.94[ASN][1000 genomes] |
| rs34817468 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35039050 | 0.84[ASN][1000 genomes] |
| rs35552641 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4329014 | 0.94[ASN][1000 genomes] |
| rs4461623 | 0.89[ASN][1000 genomes] |
| rs4705467 | 0.94[ASN][1000 genomes] |
| rs4705571 | 0.83[ASN][1000 genomes] |
| rs4705572 | 0.83[ASN][1000 genomes] |
| rs57691496 | 0.83[ASN][1000 genomes] |
| rs66580212 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6881949 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71577455 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7705489 | 0.83[ASN][1000 genomes] |
| rs7707681 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599407 | chr5:112981528-113029914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113002000-113007400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
