Variant report

Variant	rs13154277
Chromosome Location	chr5:58484797-58484798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:58483761..58484964-chr5:59095567..59096624,7	K562	blood:
2	chr5:58484022..58484971-chr5:58675909..58676491,2	MCF-7	breast:
3	chr5:58484050..58484902-chr5:58792310..58793190,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2021775	0.88[ASN][1000 genomes]
rs2081106	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34200989	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62357977	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62357996	0.88[ASN][1000 genomes]
rs62357997	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
3	chr5:58471000-58484800	Weak transcription	Pancreas	Pancrea
4	chr5:58472200-58485800	Weak transcription	Stomach Mucosa	stomach
5	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:58474800-58484800	Weak transcription	Fetal Intestine Small	intestine
7	chr5:58474800-58491000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:58475800-58484800	Weak transcription	Fetal Intestine Large	intestine
9	chr5:58479800-58487200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:58479800-58489800	Weak transcription	Gastric	stomach
11	chr5:58480000-58485400	Weak transcription	Left Ventricle	heart
12	chr5:58480200-58488800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr5:58481000-58486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:58483600-58484800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:58483600-58484800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:58483600-58484800	Active TSS	NHLF	lung
17	chr5:58483600-58485000	Enhancers	Fetal Brain Female	brain
18	chr5:58483800-58484800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:58483800-58484800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:58483800-58484800	Enhancers	Brain Cingulate Gyrus	brain
21	chr5:58483800-58484800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr5:58483800-58484800	Enhancers	Fetal Heart	heart
23	chr5:58483800-58485000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:58483800-58485000	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr5:58483800-58485000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr5:58483800-58485000	Active TSS	Stomach Smooth Muscle	stomach
27	chr5:58483800-58486000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr5:58484000-58484800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:58484000-58484800	Active TSS	Rectal Smooth Muscle	rectum
30	chr5:58484000-58484800	Enhancers	HSMM	muscle
31	chr5:58484000-58484800	Active TSS	NHDF-Ad	bronchial
32	chr5:58484000-58485000	Active TSS	Brain Anterior Caudate	brain
33	chr5:58484200-58484800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:58484200-58484800	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr5:58484200-58484800	Active TSS	Fetal Stomach	stomach
36	chr5:58484200-58485000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:58484200-58485000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr5:58484200-58485000	Active TSS	Duodenum Mucosa	Duodenum
39	chr5:58484200-58485400	Active TSS	Brain Angular Gyrus	brain
40	chr5:58484200-58485600	Active TSS	Right Atrium	heart
41	chr5:58484400-58484800	Enhancers	Primary B cells from cord blood	blood
42	chr5:58484400-58484800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:58484400-58484800	Active TSS	Brain Hippocampus Middle	brain
44	chr5:58484400-58484800	Active TSS	Fetal Muscle Leg	muscle
45	chr5:58484400-58484800	Flanking Active TSS	HUVEC	blood vessel
46	chr5:58484400-58484800	Flanking Active TSS	NH-A	brain
47	chr5:58484400-58485000	Enhancers	Primary B cells from peripheral blood	blood
48	chr5:58484400-58485000	Active TSS	Primary hematopoietic stem cells	blood
49	chr5:58484400-58485000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:58484400-58485000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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