Variant report

Variant	rs2081106
Chromosome Location	chr5:58478599-58478600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1023814	0.89[CEU][hapmap]
rs1031197	1.00[JPT][hapmap]
rs10491352	1.00[JPT][hapmap]
rs10940644	1.00[JPT][hapmap]
rs11954668	1.00[JPT][hapmap]
rs11959132	1.00[JPT][hapmap]
rs11959567	1.00[JPT][hapmap]
rs12519611	1.00[JPT][hapmap]
rs13154277	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1445948	1.00[JPT][hapmap]
rs1445953	1.00[JPT][hapmap]
rs1445954	1.00[JPT][hapmap]
rs16889479	1.00[JPT][hapmap]
rs17444185	1.00[JPT][hapmap]
rs17528522	1.00[JPT][hapmap]
rs17628114	1.00[JPT][hapmap]
rs17780175	1.00[JPT][hapmap]
rs1838733	1.00[JPT][hapmap]
rs1867711	1.00[JPT][hapmap]
rs1947090	1.00[JPT][hapmap]
rs2021775	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs2028836	1.00[JPT][hapmap]
rs2112957	1.00[CEU][hapmap]
rs2409631	1.00[JPT][hapmap]
rs34200989	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700325	1.00[JPT][hapmap]
rs4700328	1.00[JPT][hapmap]
rs62357977	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62357996	0.85[ASN][1000 genomes]
rs62357997	0.85[ASN][1000 genomes]
rs6858946	1.00[JPT][hapmap]
rs6877508	1.00[JPT][hapmap]
rs6891161	1.00[JPT][hapmap]
rs7444432	1.00[CEU][hapmap]
rs7719441	1.00[JPT][hapmap]
rs9292195	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
2	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
3	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:58461000-58484200	Weak transcription	HUVEC	blood vessel
5	chr5:58464200-58484000	Weak transcription	Brain Anterior Caudate	brain
6	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
7	chr5:58464800-58478800	Weak transcription	Hela-S3	cervix
8	chr5:58466200-58479400	Weak transcription	Psoas Muscle	Psoas
9	chr5:58469000-58483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:58469200-58484400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:58470000-58483400	Weak transcription	Fetal Lung	lung
12	chr5:58470200-58481400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:58470600-58480600	Weak transcription	Fetal Heart	heart
14	chr5:58470600-58482000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:58470600-58483800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:58471000-58479000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:58471000-58483600	Weak transcription	Brain Angular Gyrus	brain
18	chr5:58471000-58483800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:58471000-58484800	Weak transcription	Pancreas	Pancrea
20	chr5:58471600-58484200	Weak transcription	Brain Germinal Matrix	brain
21	chr5:58472000-58479000	Weak transcription	Gastric	stomach
22	chr5:58472000-58484400	Weak transcription	Primary B cells from cord blood	blood
23	chr5:58472200-58485800	Weak transcription	Stomach Mucosa	stomach
24	chr5:58472400-58480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:58472800-58484200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr5:58473800-58478600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:58474600-58478600	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:58474600-58478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:58474600-58478800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:58474600-58481200	Weak transcription	Colon Smooth Muscle	Colon
32	chr5:58474600-58483600	Weak transcription	Fetal Brain Female	brain
33	chr5:58474600-58484400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr5:58474800-58481000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:58474800-58484400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:58474800-58484800	Weak transcription	Fetal Intestine Small	intestine
37	chr5:58474800-58491000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr5:58475000-58478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:58475000-58479600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr5:58475000-58484400	Weak transcription	Right Ventricle	heart
41	chr5:58475200-58478800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:58475200-58484200	Weak transcription	Fetal Stomach	stomach
43	chr5:58475800-58484800	Weak transcription	Fetal Intestine Large	intestine
44	chr5:58476200-58479600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:58476400-58478800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr5:58476400-58479600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr5:58476600-58478600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:58476800-58484200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:58477600-58479800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr5:58477800-58478800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links