Variant report

Variant	rs17628114
Chromosome Location	chr5:58566588-58566589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1031197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10491352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10940644	1.00[JPT][hapmap]
rs11954668	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11959132	1.00[JPT][hapmap]
rs11959567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12518773	0.86[ASN][1000 genomes]
rs12519611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12521263	0.80[ASN][1000 genomes]
rs1445948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1445952	0.89[ASN][1000 genomes]
rs1445953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1445954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1579848	0.80[ASN][1000 genomes]
rs1579849	0.86[ASN][1000 genomes]
rs16889479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16889499	0.83[ASN][1000 genomes]
rs16889518	0.89[ASN][1000 genomes]
rs17444185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17528522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17528578	0.89[ASN][1000 genomes]
rs17780175	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1823070	0.83[ASN][1000 genomes]
rs1838733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1867711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1867712	0.83[ASN][1000 genomes]
rs1947090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1947095	0.84[ASN][1000 genomes]
rs2021775	1.00[JPT][hapmap]
rs2028836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2081106	1.00[JPT][hapmap]
rs2409631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4700325	1.00[JPT][hapmap]
rs4700328	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6858946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6877508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6891161	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs721826	1.00[CEU][hapmap]
rs7703022	1.00[CHB][hapmap]
rs7719441	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58553800-58568600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:58560200-58566600	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:58560400-58570000	Weak transcription	Fetal Lung	lung
4	chr5:58561000-58569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:58561000-58571000	Weak transcription	Left Ventricle	heart
6	chr5:58562800-58568800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:58563000-58568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:58563000-58568200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:58563000-58568800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:58563000-58569000	Weak transcription	Psoas Muscle	Psoas
11	chr5:58563600-58566800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:58563800-58568600	Weak transcription	Fetal Intestine Large	intestine
13	chr5:58564600-58567400	Transcr. at gene 5' and 3'	A549	lung
14	chr5:58565200-58571000	Weak transcription	Fetal Heart	heart
15	chr5:58565800-58566600	Enhancers	Colon Smooth Muscle	Colon
16	chr5:58565800-58567600	Active TSS	Hela-S3	cervix
17	chr5:58566400-58567600	Enhancers	Rectal Mucosa Donor 31	rectum

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