Variant report

Variant	rs13155906
Chromosome Location	chr5:178269524-178269525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10903231	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs10903232	0.80[ASN][1000 genomes]
rs10903233	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs11249581	0.80[ASN][1000 genomes]
rs11249582	0.80[ASN][1000 genomes]
rs11249583	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs11249584	0.80[ASN][1000 genomes]
rs11249586	0.94[CHB][hapmap]
rs11249587	0.94[CHB][hapmap]
rs11249588	0.94[CHB][hapmap]
rs11249589	0.80[ASN][1000 genomes]
rs11249590	0.80[ASN][1000 genomes]
rs11249591	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs11249592	0.80[ASN][1000 genomes]
rs11249593	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11738631	0.80[ASN][1000 genomes]
rs11741533	0.80[ASN][1000 genomes]
rs11743503	0.86[ASN][1000 genomes]
rs11743902	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs11952175	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs11952214	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs11952453	0.80[ASN][1000 genomes]
rs12054925	0.80[ASN][1000 genomes]
rs12054934	0.80[ASN][1000 genomes]
rs12055051	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs12055057	0.80[ASN][1000 genomes]
rs12152723	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs12153004	0.80[ASN][1000 genomes]
rs12153245	0.80[ASN][1000 genomes]
rs13157175	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13160205	0.80[ASN][1000 genomes]
rs13162024	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs13165291	0.81[ASN][1000 genomes]
rs13165500	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs13174478	0.80[ASN][1000 genomes]
rs13174654	0.81[CHB][hapmap]
rs13177176	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs13177181	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs13180740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13180861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181764	0.86[CHB][hapmap]
rs13184377	0.80[ASN][1000 genomes]
rs28397824	0.81[ASN][1000 genomes]
rs34025705	0.80[ASN][1000 genomes]
rs34124262	0.80[ASN][1000 genomes]
rs34671298	0.80[ASN][1000 genomes]
rs34720930	0.80[ASN][1000 genomes]
rs34751264	0.80[ASN][1000 genomes]
rs34798599	0.80[ASN][1000 genomes]
rs35190196	0.80[ASN][1000 genomes]
rs35854619	0.80[ASN][1000 genomes]
rs35862563	0.86[ASN][1000 genomes]
rs35869133	0.80[ASN][1000 genomes]
rs62393027	0.80[ASN][1000 genomes]
rs62393028	0.80[ASN][1000 genomes]
rs67665237	0.80[ASN][1000 genomes]
rs6871932	0.86[ASN][1000 genomes]
rs71594798	0.80[ASN][1000 genomes]
rs72814671	0.80[ASN][1000 genomes]
rs7442757	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs868290	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178263600-178286400	Weak transcription	Right Atrium	heart
2	chr5:178266200-178269800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:178266400-178281600	Weak transcription	Placenta	Placenta

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