Variant report

Variant	rs6871932
Chromosome Location	chr5:178270810-178270811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178264186..178266313-chr5:178270488..178273068,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10903231	0.94[CHB][hapmap]
rs10903233	0.94[CHB][hapmap]
rs11249583	0.94[CHB][hapmap];0.86[CHD][hapmap];0.80[MEX][hapmap]
rs11249586	0.94[CHB][hapmap]
rs11249587	0.94[CHB][hapmap]
rs11249588	0.94[CHB][hapmap]
rs11249591	0.94[CHB][hapmap]
rs11249593	0.85[ASN][1000 genomes]
rs11743503	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743902	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs11952175	0.94[CHB][hapmap]
rs11952214	0.94[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs12055051	0.94[CHB][hapmap]
rs12152723	0.94[CHB][hapmap]
rs13155906	0.86[ASN][1000 genomes]
rs13157175	0.95[ASN][1000 genomes]
rs13162024	0.87[CHB][hapmap]
rs13165500	0.85[CHB][hapmap]
rs13177176	0.94[CHB][hapmap]
rs13177181	0.94[CHB][hapmap]
rs13180740	0.95[ASN][1000 genomes]
rs13180861	0.95[ASN][1000 genomes]
rs13181764	0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs35862563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877160	0.83[CHD][hapmap]
rs7442757	0.94[CHB][hapmap]
rs868290	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv462574	chr5:178269682-178313078	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv600463	chr5:178269682-178313078	Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178263600-178286400	Weak transcription	Right Atrium	heart
2	chr5:178266400-178281600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links