Variant report

Variant	rs13156669
Chromosome Location	chr5:154345987-154345988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154236951..154238944-chr5:154345833..154349110,3	MCF-7	breast:
2	chr5:154345809..154348149-chr5:154351585..154354397,2	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10515728	0.81[CHD][hapmap]
rs13153640	0.84[TSI][hapmap]
rs13156153	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13162291	0.81[JPT][hapmap]
rs13164115	0.90[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13182236	0.85[TSI][hapmap]
rs1403559	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2434217	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2434218	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2544891	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6882998	1.00[AFR][1000 genomes]
rs816735	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13156669	CNOT8	cis	Adipose Subcutaneous	GTEx
rs13156669	CNOT8	cis	Thyroid	GTEx
rs13156669	CNOT8	cis	Artery Tibial	GTEx
rs13156669	CNOT8	cis	Nerve Tibial	GTEx
rs13156669	CNOT8	cis	Skin Sun Exposed Lower leg	GTEx
rs13156669	CNOT8	cis	lung	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
2	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
3	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
4	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
8	chr5:154329800-154347200	Weak transcription	Psoas Muscle	Psoas
9	chr5:154331000-154346200	Weak transcription	K562	blood
10	chr5:154334800-154347200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
18	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:154337600-154348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:154339000-154347800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
26	chr5:154339200-154355400	Weak transcription	Gastric	stomach
27	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:154339400-154346000	Weak transcription	Aorta	Aorta
29	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
32	chr5:154339400-154355600	Weak transcription	Lung	lung
33	chr5:154339600-154346000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr5:154339600-154346800	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:154339800-154346600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr5:154339800-154347200	Weak transcription	Brain Substantia Nigra	brain
39	chr5:154340200-154346000	Weak transcription	Fetal Brain Female	brain
40	chr5:154340200-154346600	Weak transcription	NH-A	brain
41	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:154340400-154346000	Weak transcription	Ovary	ovary
43	chr5:154340400-154347200	Weak transcription	HSMM	muscle
44	chr5:154341000-154346000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:154341000-154346600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr5:154341400-154346000	Weak transcription	HSMMtube	muscle
47	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:154341600-154346000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:154341600-154347200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:154341600-154348200	Weak transcription	Left Ventricle	heart

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