Variant report

Variant	rs13182236
Chromosome Location	chr5:154315354-154315355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:154314851-154315380	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154314869..154319173-chr5:154319212..154322644,7	K562	blood:
2	chr5:154313346..154315554-chr5:154316514..154318608,2	MCF-7	breast:

Variant related genes	Relation type
GEMIN5	TF binding region
ENSG00000082516	Chromatin interaction
ENSG00000082515	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13153640	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13156669	0.85[TSI][hapmap]
rs13162193	1.00[JPT][hapmap]
rs13164115	1.00[AFR][1000 genomes]
rs13177143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13178728	1.00[AFR][1000 genomes]
rs13186258	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2103073	1.00[AFR][1000 genomes]
rs2434217	0.85[TSI][hapmap]
rs2434218	1.00[AFR][1000 genomes]
rs2544891	0.85[TSI][hapmap]
rs35838764	1.00[AFR][1000 genomes]
rs6882998	0.85[TSI][hapmap]
rs816735	1.00[AFR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13182236	CNOT8	cis	Adipose Subcutaneous	GTEx
rs13182236	CNOT8	cis	lung	GTEx
rs13182236	CNOT8	cis	Nerve Tibial	GTEx
rs13182236	CNOT8	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
2	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:154291600-154316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:154292600-154316200	Weak transcription	Fetal Heart	heart
13	chr5:154294000-154315400	Strong transcription	Adipose Nuclei	Adipose
14	chr5:154294000-154315800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:154302600-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:154304000-154316400	Weak transcription	Small Intestine	intestine
17	chr5:154304200-154316200	Weak transcription	NHLF	lung
18	chr5:154305200-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:154305800-154317000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:154306400-154316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:154306800-154316600	Weak transcription	Pancreas	Pancrea
22	chr5:154307000-154316200	Weak transcription	NHDF-Ad	bronchial
23	chr5:154307200-154316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:154307200-154316600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:154307400-154316400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:154307400-154316600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:154307400-154316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:154307400-154316600	Weak transcription	Esophagus	oesophagus
29	chr5:154307400-154316600	Weak transcription	Gastric	stomach
30	chr5:154308400-154315600	Weak transcription	Fetal Brain Male	brain
31	chr5:154309400-154316200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr5:154310000-154316600	Weak transcription	Thymus	Thymus
33	chr5:154310400-154316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:154310400-154316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:154311000-154316200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr5:154311000-154316200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr5:154311000-154316400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr5:154311000-154316400	Weak transcription	Colonic Mucosa	Colon
39	chr5:154311200-154316200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr5:154311200-154316200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:154311200-154316200	Weak transcription	Brain Germinal Matrix	brain
42	chr5:154311200-154316400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:154311200-154316400	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:154311200-154316600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:154311200-154316600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:154311200-154316600	Weak transcription	Fetal Kidney	kidney
47	chr5:154311200-154316600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr5:154311200-154316600	Weak transcription	Right Ventricle	heart
49	chr5:154311400-154316600	Weak transcription	Spleen	Spleen
50	chr5:154311600-154316600	Weak transcription	Brain Angular Gyrus	brain

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