Variant report

Variant	rs13161413
Chromosome Location	chr5:90961680-90961681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13184269	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869888	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1692434	0.84[EUR][1000 genomes]
rs1692436	0.84[EUR][1000 genomes]
rs1701359	0.84[EUR][1000 genomes]
rs2062965	0.82[EUR][1000 genomes]
rs34444727	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34495512	0.84[EUR][1000 genomes]
rs34556970	0.82[EUR][1000 genomes]
rs34755428	0.82[EUR][1000 genomes]
rs67419767	0.84[EUR][1000 genomes]
rs71637346	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830394	chr5:90944049-91107749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv830395	chr5:90955521-91135272	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90960200-90963800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links